TY - JOUR
T1 - OptADMET
T2 - a web-based tool for substructure modifications to improve ADMET properties of lead compounds
AU - Yi, Jiacai
AU - Shi, Shaohua
AU - Fu, Li
AU - Yang, Ziyi
AU - Nie, Pengfei
AU - Lu, Aiping
AU - Wu, Chengkun
AU - Deng, Yafeng
AU - Hsieh, Changyu
AU - Zeng, Xiangxiang
AU - Hou, Tingjun
AU - Cao, Dongsheng
N1 - Funding Information:
We thank the user community for using OptADMET and providing us with valuable suggestions regarding further improvement of this tool. We also acknowledge H. Xu, and the High-Performance Computing Center of Central South University for support. The study was approved by the university’s review board. This work was supported by National Key Research and Development Program of China (2021YFF1201400), National Natural Science Foundation of China (22173118, 22220102001), Hunan Provincial Science Fund for Distinguished Young Scholars (2021JJ10068), the science and technology innovation Program of Hunan Province (2021RC4011), the Natural Science Foundation of Hunan Province (2022JJ80104), and the 2020 Guangdong Provincial Science and Technology Innovation Strategy Special Fund (2020B1212030006, Guangdong-Hong Kong-Macau Joint Lab).
Publisher Copyright:
© Springer Nature Limited 2024.
PY - 2024/4
Y1 - 2024/4
N2 - Lead optimization is a crucial step in the drug discovery process, which aims to design potential drug candidates from biologically active hits. During lead optimization, active hits undergo modifications to improve their absorption, distribution, metabolism, excretion and toxicity (ADMET) profiles. Medicinal chemists face key questions regarding which compound(s) should be synthesized next and how to balance multiple ADMET properties. Reliable transformation rules from multiple experimental analyses are critical to improve this decision-making process. We developed OptADMET (https://cadd.nscc-tj.cn/deploy/optadmet/), an integrated web-based platform that provides chemical transformation rules for 32 ADMET properties and leverages prior experimental data for lead optimization. The multiproperty transformation rule database contains a total of 41,779 validated transformation rules generated from the analysis of 177,191 reliable experimental datasets. Additionally, 146,450 rules were generated by analyzing 239,194 molecular data predictions. OptADMET provides the ADMET profiles of all optimized molecules from the queried molecule and enables the prediction of desirable substructure transformations and subsequent validation of drug candidates. OptADMET is based on matched molecular pairs analysis derived from synthetic chemistry, thus providing improved practicality over other methods. OptADMET is designed for use by both experimental and computational scientists.
AB - Lead optimization is a crucial step in the drug discovery process, which aims to design potential drug candidates from biologically active hits. During lead optimization, active hits undergo modifications to improve their absorption, distribution, metabolism, excretion and toxicity (ADMET) profiles. Medicinal chemists face key questions regarding which compound(s) should be synthesized next and how to balance multiple ADMET properties. Reliable transformation rules from multiple experimental analyses are critical to improve this decision-making process. We developed OptADMET (https://cadd.nscc-tj.cn/deploy/optadmet/), an integrated web-based platform that provides chemical transformation rules for 32 ADMET properties and leverages prior experimental data for lead optimization. The multiproperty transformation rule database contains a total of 41,779 validated transformation rules generated from the analysis of 177,191 reliable experimental datasets. Additionally, 146,450 rules were generated by analyzing 239,194 molecular data predictions. OptADMET provides the ADMET profiles of all optimized molecules from the queried molecule and enables the prediction of desirable substructure transformations and subsequent validation of drug candidates. OptADMET is based on matched molecular pairs analysis derived from synthetic chemistry, thus providing improved practicality over other methods. OptADMET is designed for use by both experimental and computational scientists.
UR - http://www.scopus.com/inward/record.url?scp=85182840211&partnerID=8YFLogxK
U2 - 10.1038/s41596-023-00942-4
DO - 10.1038/s41596-023-00942-4
M3 - Journal article
C2 - 38263521
SN - 1754-2189
VL - 19
SP - 1105
EP - 1121
JO - Nature Protocols
JF - Nature Protocols
IS - 4
ER -