On mining micro-array data by order-preserving submatrix

Lin Cheung*, Kevin Y. Yip, David W. Cheung, Ben Kao, Michael K. Ng

*Corresponding author for this work

Research output: Chapter in book/report/conference proceedingConference proceedingpeer-review

3 Citations (Scopus)

Abstract

We study the problem of pattern-based subspace clustering. Unlike traditional clustering methods that focus on grouping objects with similar values on a set of dimensions, clustering by pattern similarity finds objects that exhibit a coherent pattern of rises and falls in subspaces. Applications of pattern-based subspace clustering include DNA micro-array data analysis, automatic recommendation systems and target marketing systems. Our goal is to devise pattern-based clustering methods that are capable of (1) discovering useful patterns of various shapes, and (2) discovering all significant patterns. We argue that previous solutions in pattern-based subspace clustering do not satisfy both requirements. Our approach is to extend the idea of Order-Preserving Submatrix (or OPSM). We devise a novel algorithm for mining OPSM, show that OPSM can be generalized to cover most existing pattern-based clustering models, and propose a number of extension to the original OPSM model.

Original languageEnglish
Title of host publicationProceedings - International Workshop on Biomedical Data Engineering, BMDE2005
PublisherIEEE
Pages1-8
Number of pages8
ISBN (Print)0769526578, 9780769526577
DOIs
Publication statusPublished - Apr 2005
EventInternational Workshop on Biomedical Data Engineering, BDME 2005 - Tokyo, Japan
Duration: 3 Apr 20054 Apr 2005

Publication series

NameProceedings - International Workshop on Biomedical Data Engineering, BMDE
Volume2005

Conference

ConferenceInternational Workshop on Biomedical Data Engineering, BDME 2005
Country/TerritoryJapan
CityTokyo
Period3/04/054/04/05

Scopus Subject Areas

  • General Engineering

User-Defined Keywords

  • Data mining
  • Gene expression
  • Pattern-based clustering

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