TY - JOUR
T1 - Investigation on the Potential Functions of ZmEPF/EPFL Family Members in Response to Abiotic Stress in Maize
AU - Liu, Rui
AU - Xu, Keli
AU - Li, Yu
AU - Zhao, Wanqing
AU - Ji, Hongjing
AU - Lei, Xiongbiao
AU - Ma, Tian
AU - Ye, Juan
AU - Zhang, Jianhua
AU - Du, Hewei
AU - Cao, Shi Kai
N1 - This research was funded by the Hubei Natural Science Foundation (2022CFB183).
Publisher Copyright:
© 2024 by the authors.
PY - 2024/7/1
Y1 - 2024/7/1
N2 - Maize is an important crop used for food, feed, and fuel. Abiotic stress is an important factor affecting maize yield. The EPF/EPFL gene family encodes class-specific secretory proteins that play an important role in the response to abiotic stress in plants. In order to explore and utilize the EPF/EPFL family in maize, the family members were systematically identified, and their chromosomal localization, physicochemical properties, cis-acting element prediction in promoters, phylogenetic tree construction, and expression pattern analysis were carried out using bioinformatics techniques. A total of 18 ZmEPF/EPFL proteins were identified in maize, which are mostly alkaline and a small portion acidic. Subcellular localization results showed that ZmEPF6, ZmEPF12, and ZmEPFL2 are localized in the nucleus and cytoplasm. Analysis of cis-acting elements revealed that members of the ZmEPF/EPFL family contain regulatory elements such as light response, anoxic, low temperature, and hormone response regulatory elements. RT-qPCR results showed that these family members are indeed responding to cold stress and hormone treatments. These results of this study provide a theoretical basis for improving the abiotic stress resistance of maize in future research.
AB - Maize is an important crop used for food, feed, and fuel. Abiotic stress is an important factor affecting maize yield. The EPF/EPFL gene family encodes class-specific secretory proteins that play an important role in the response to abiotic stress in plants. In order to explore and utilize the EPF/EPFL family in maize, the family members were systematically identified, and their chromosomal localization, physicochemical properties, cis-acting element prediction in promoters, phylogenetic tree construction, and expression pattern analysis were carried out using bioinformatics techniques. A total of 18 ZmEPF/EPFL proteins were identified in maize, which are mostly alkaline and a small portion acidic. Subcellular localization results showed that ZmEPF6, ZmEPF12, and ZmEPFL2 are localized in the nucleus and cytoplasm. Analysis of cis-acting elements revealed that members of the ZmEPF/EPFL family contain regulatory elements such as light response, anoxic, low temperature, and hormone response regulatory elements. RT-qPCR results showed that these family members are indeed responding to cold stress and hormone treatments. These results of this study provide a theoretical basis for improving the abiotic stress resistance of maize in future research.
KW - abiotic stress
KW - bioinformatic analysis
KW - EPF/EPFL
KW - gene family
KW - hormone
KW - maize
UR - http://www.scopus.com/inward/record.url?scp=85198485863&partnerID=8YFLogxK
U2 - 10.3390/ijms25137196
DO - 10.3390/ijms25137196
M3 - Journal article
C2 - 39000300
AN - SCOPUS:85198485863
SN - 1661-6596
VL - 25
JO - International Journal of Molecular Sciences
JF - International Journal of Molecular Sciences
IS - 13
M1 - 7196
ER -