TY - JOUR
T1 - Functional sensitivity and mutational robustness of proteins
AU - Tang, Qian Yuan
AU - Hatakeyama, Tetsuhiro S.
AU - Kaneko, Kunihiko
N1 - Funding information:
We wish to thank Alexander S. Mikhailov, Holger Flechsig, Atsushi Kamimura, Takyuya U Sato, Lei-Han Tang, and Changsong Zhou for participating in stimulating discussions. This research was partially supported by a Grant-in-Aid for Scientific Research on Innovative Areas (17H06386), from the Ministry of Education, Culture, Sports, Science and Technology of Japan, and a Grant-in-Aid for Scientific Research (A)20H00123 from the Japanese Society for the Promotion of Science.
Publisher Copyright:
Published by the American Physical Society.
PY - 2020/9
Y1 - 2020/9
N2 - Sensitivity and robustness appear to be contrasting concepts. However, natural proteins are robust enough to tolerate random mutations, meanwhile be susceptible enough to sense environmental signals, exhibiting both high functional sensitivity (i.e., plasticity) and mutational robustness. Uncovering how these two aspects are compatible is a fundamental question in the protein dynamics and genotype-phenotype relation. In this work, a general framework is established to analyze the dynamics of protein systems under both external and internal perturbations. We introduce fluctuation entropy for the functional sensitivity and the spectrum entropy for the mutational robustness. The compatibility of sensitivity and robustness is analyzed by the optimization of two entropies, which leads to the power-law vibration spectrum of proteins. These power-law behaviors are confirmed extensively by protein data, as a hallmark of criticality. Moreover, the dependence of functional sensitivity and mutational robustness on the protein size suggests a general evolutionary constraint for proteins with different chain lengths. This framework can also establish a general link of the criticality with robustness-plasticity compatibility, both of which are ubiquitous features in biological systems.
AB - Sensitivity and robustness appear to be contrasting concepts. However, natural proteins are robust enough to tolerate random mutations, meanwhile be susceptible enough to sense environmental signals, exhibiting both high functional sensitivity (i.e., plasticity) and mutational robustness. Uncovering how these two aspects are compatible is a fundamental question in the protein dynamics and genotype-phenotype relation. In this work, a general framework is established to analyze the dynamics of protein systems under both external and internal perturbations. We introduce fluctuation entropy for the functional sensitivity and the spectrum entropy for the mutational robustness. The compatibility of sensitivity and robustness is analyzed by the optimization of two entropies, which leads to the power-law vibration spectrum of proteins. These power-law behaviors are confirmed extensively by protein data, as a hallmark of criticality. Moreover, the dependence of functional sensitivity and mutational robustness on the protein size suggests a general evolutionary constraint for proteins with different chain lengths. This framework can also establish a general link of the criticality with robustness-plasticity compatibility, both of which are ubiquitous features in biological systems.
UR - http://www.scopus.com/inward/record.url?scp=85100505800&partnerID=8YFLogxK
U2 - 10.1103/PhysRevResearch.2.033452
DO - 10.1103/PhysRevResearch.2.033452
M3 - Journal article
AN - SCOPUS:85100505800
SN - 2643-1564
VL - 2
JO - Physical Review Research
JF - Physical Review Research
IS - 3
M1 - 033452
ER -