Abstract
Identifyingpotential drug-target interactions (DTIs) is crucial for understanding drug mechanisms, and recent computational methods have yielded promising results in this area. However, these methods face several challenges, including limited model generalization due to heavy reliance on multiple similarity datasets and complex feature extraction, as well as a lack of interpretability by ignoring intrinsic information about drugs and targets. To address these challenges, we propose DrugKANs, a novel DTI prediction model that enhances both the quality and interpretability of DTI representations by integrating a dual-tower architecture with Kolmogorov-Arnold Network (KAN) technology. Our model involves utilizing a pre-trained model to derive initial representations of drugs and targets, and employing a lightweight attention mechanism to capture key features, thereby improving representation quality. We leverage the dual-tower architecture and a lightweight feature interaction mechanism to extract high-level representations separately for drugs and targets, aiming to reduce complex feature interactions and mitigate overfitting. Additionally, we incorporate a contrastive learning strategy within the drug-target bipartite graph to address sparse neighborhood effects and enhance topological information. The inclusion of KAN technology further improves the interpretability of the DTI prediction model. Experimental results on public datasets demonstrate that our model predicts DTIs effectively, underscoring its potential as a valuable tool in drug discovery. This comprehensive methodology presents a balanced approach to overcoming the identified challenges in DTI prediction. Our data and code are available at: https://github.com/Excelsior511/DrugKANs.
| Original language | English |
|---|---|
| Number of pages | 12 |
| Journal | IEEE Journal of Biomedical and Health Informatics |
| DOIs | |
| Publication status | E-pub ahead of print - 5 May 2025 |
UN SDGs
This output contributes to the following UN Sustainable Development Goals (SDGs)
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SDG 3 Good Health and Well-being
User-Defined Keywords
- Drug-target interaction prediction
- Kolmogorov-arnold networks (KANs)
- contrastive learning
- dual-tower architecture
- lightweight attention mechanism
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