TY - JOUR
T1 - DrugKANs: A Paradigm to Enhance Drug-Target Interaction Prediction With KANs
AU - Fu, Xiangzheng
AU - Du, Zhenya
AU - Chen, Yifan
AU - Chen, Haiting
AU - Zhuo, Linlin
AU - Lu, Aiping
AU - Cao, Dongsheng
AU - Yao, Xiaojun
N1 - The work was supported in part by the National Natural Science Foundation of China (No. 62372158), and the Natural Science Foundation of Chongqing (No. CSTB2022NSCQ-MSX1032). And it was also supported by a grant from the ’Macao Young Scholars Program’ (Project code: AM2021025)
Publisher Copyright:
© 2025 IEEE.
PY - 2025/5/5
Y1 - 2025/5/5
N2 - Identifyingpotential drug-target interactions (DTIs) is crucial for understanding drug mechanisms, and recent computational methods have yielded promising results in this area. However, these methods face several challenges, including limited model generalization due to heavy reliance on multiple similarity datasets and complex feature extraction, as well as a lack of interpretability by ignoring intrinsic information about drugs and targets. To address these challenges, we propose DrugKANs, a novel DTI prediction model that enhances both the quality and interpretability of DTI representations by integrating a dual-tower architecture with Kolmogorov-Arnold Network (KAN) technology. Our model involves utilizing a pre-trained model to derive initial representations of drugs and targets, and employing a lightweight attention mechanism to capture key features, thereby improving representation quality. We leverage the dual-tower architecture and a lightweight feature interaction mechanism to extract high-level representations separately for drugs and targets, aiming to reduce complex feature interactions and mitigate overfitting. Additionally, we incorporate a contrastive learning strategy within the drug-target bipartite graph to address sparse neighborhood effects and enhance topological information. The inclusion of KAN technology further improves the interpretability of the DTI prediction model. Experimental results on public datasets demonstrate that our model predicts DTIs effectively, underscoring its potential as a valuable tool in drug discovery. This comprehensive methodology presents a balanced approach to overcoming the identified challenges in DTI prediction. Our data and code are available at: https://github.com/Excelsior511/DrugKANs.
AB - Identifyingpotential drug-target interactions (DTIs) is crucial for understanding drug mechanisms, and recent computational methods have yielded promising results in this area. However, these methods face several challenges, including limited model generalization due to heavy reliance on multiple similarity datasets and complex feature extraction, as well as a lack of interpretability by ignoring intrinsic information about drugs and targets. To address these challenges, we propose DrugKANs, a novel DTI prediction model that enhances both the quality and interpretability of DTI representations by integrating a dual-tower architecture with Kolmogorov-Arnold Network (KAN) technology. Our model involves utilizing a pre-trained model to derive initial representations of drugs and targets, and employing a lightweight attention mechanism to capture key features, thereby improving representation quality. We leverage the dual-tower architecture and a lightweight feature interaction mechanism to extract high-level representations separately for drugs and targets, aiming to reduce complex feature interactions and mitigate overfitting. Additionally, we incorporate a contrastive learning strategy within the drug-target bipartite graph to address sparse neighborhood effects and enhance topological information. The inclusion of KAN technology further improves the interpretability of the DTI prediction model. Experimental results on public datasets demonstrate that our model predicts DTIs effectively, underscoring its potential as a valuable tool in drug discovery. This comprehensive methodology presents a balanced approach to overcoming the identified challenges in DTI prediction. Our data and code are available at: https://github.com/Excelsior511/DrugKANs.
KW - Drug-target interaction prediction
KW - Kolmogorov-arnold networks (KANs)
KW - contrastive learning
KW - dual-tower architecture
KW - lightweight attention mechanism
UR - http://www.scopus.com/inward/record.url?scp=105004586000&partnerID=8YFLogxK
U2 - 10.1109/JBHI.2025.3566931
DO - 10.1109/JBHI.2025.3566931
M3 - Journal article
SN - 2168-2208
JO - IEEE Journal of Biomedical and Health Informatics
JF - IEEE Journal of Biomedical and Health Informatics
ER -