DrugKANs: A Paradigm to Enhance Drug-Target Interaction Prediction With KANs

Xiangzheng Fu, Zhenya Du, Yifan Chen, Haiting Chen*, Linlin Zhuo, Aiping Lu*, Dongsheng Cao, Xiaojun Yao*

*Corresponding author for this work

Research output: Contribution to journalJournal articlepeer-review

Abstract

Identifyingpotential drug-target interactions (DTIs) is crucial for understanding drug mechanisms, and recent computational methods have yielded promising results in this area. However, these methods face several challenges, including limited model generalization due to heavy reliance on multiple similarity datasets and complex feature extraction, as well as a lack of interpretability by ignoring intrinsic information about drugs and targets. To address these challenges, we propose DrugKANs, a novel DTI prediction model that enhances both the quality and interpretability of DTI representations by integrating a dual-tower architecture with Kolmogorov-Arnold Network (KAN) technology. Our model involves utilizing a pre-trained model to derive initial representations of drugs and targets, and employing a lightweight attention mechanism to capture key features, thereby improving representation quality. We leverage the dual-tower architecture and a lightweight feature interaction mechanism to extract high-level representations separately for drugs and targets, aiming to reduce complex feature interactions and mitigate overfitting. Additionally, we incorporate a contrastive learning strategy within the drug-target bipartite graph to address sparse neighborhood effects and enhance topological information. The inclusion of KAN technology further improves the interpretability of the DTI prediction model. Experimental results on public datasets demonstrate that our model predicts DTIs effectively, underscoring its potential as a valuable tool in drug discovery. This comprehensive methodology presents a balanced approach to overcoming the identified challenges in DTI prediction. Our data and code are available at: https://github.com/Excelsior511/DrugKANs.
Original languageEnglish
Number of pages12
JournalIEEE Journal of Biomedical and Health Informatics
DOIs
Publication statusE-pub ahead of print - 5 May 2025

User-Defined Keywords

  • Drug-target interaction prediction
  • Kolmogorov-arnold networks (KANs)
  • contrastive learning
  • dual-tower architecture
  • lightweight attention mechanism

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