TY - JOUR
T1 - Discovery of ASGR1 and HMGCR dual-target inhibitors based on supervised learning, molecular docking, molecular dynamics simulations, and biological evaluation
AU - Liu, Yanfeng
AU - Deng, Liangying
AU - Ding, Feng
AU - Zhang, Wenhui
AU - Zhang, Shuran
AU - Zeng, Bailin
AU - Tong, Huangjin
AU - Wu, Lixing
N1 - This work was supported by the National Natural Science Foundation of China (No. 82305010 and 82374262), Medical Research Project of Jiangsu Province Health Commission in 2023 (No. H2023084 and K2023056), the Science and Technology Project of Nanjing Lishui District Hospital of Traditional Chinese Medicine in 2022 (Grant No. LZY202202), Science and Technology Development Planning Youth Fund Project of Traditional Chinese Medicine of Jiangsu Province of China (Grant No. QN202005), Advanced Training Program for Leading Personnel in Traditional Chinese Medicine in Jiangsu Province(Jiangsu Traditional Chinese Medicine Science and Education [2022] no.17) and the Veteran Herb Pharmacist inheritance studio in Jiangsu Province (Jiangsu Traditional Chinese Medicine Science and Education [2024] no.4).
Publisher Copyright:
© 2025 Elsevier Inc.
PY - 2025/5
Y1 - 2025/5
N2 - 3-Hydroxy-3-Methylglutaryl-CoA Reductase (HMGCR) and Asialoglycoprotein Receptor 1 (ASGR1) are potential therapeutic targets for atherosclerotic cardiovascular disease (ASCVD). In this study, we employed an innovative approach that combined ligand-based supervised learning, molecular docking, molecular dynamics simulations, and various in-silico techniques. The objective was to effectively screen the Chemdiv and SPECS molecule databases to discover potential inhibitors targeting both HMGCR and ASGR1, resulting in a dual inhibition effect. Compound 8006–6092, K007–0721, and D011–1471 exhibited inhibition rates of 41.48 %, 61.48 %, and 49.63 %, respectively, at a concentration of 10 μM against HMGCR. In addition, they demonstrated significant binding to ASGR1, with dissociation constants (Kd) of 461.33 μM, 67.63 μM, and 695.50 μM, respectively. These findings suggest that these dual inhibitors, 8006–6092, K007–0721, and D011–1471, present promising outcomes, potentially warranting further optimization as lead compounds for the treatment of ASCVD.
AB - 3-Hydroxy-3-Methylglutaryl-CoA Reductase (HMGCR) and Asialoglycoprotein Receptor 1 (ASGR1) are potential therapeutic targets for atherosclerotic cardiovascular disease (ASCVD). In this study, we employed an innovative approach that combined ligand-based supervised learning, molecular docking, molecular dynamics simulations, and various in-silico techniques. The objective was to effectively screen the Chemdiv and SPECS molecule databases to discover potential inhibitors targeting both HMGCR and ASGR1, resulting in a dual inhibition effect. Compound 8006–6092, K007–0721, and D011–1471 exhibited inhibition rates of 41.48 %, 61.48 %, and 49.63 %, respectively, at a concentration of 10 μM against HMGCR. In addition, they demonstrated significant binding to ASGR1, with dissociation constants (Kd) of 461.33 μM, 67.63 μM, and 695.50 μM, respectively. These findings suggest that these dual inhibitors, 8006–6092, K007–0721, and D011–1471, present promising outcomes, potentially warranting further optimization as lead compounds for the treatment of ASCVD.
KW - 3-hydroxy-3-methylglutaryl-CoA reductase (HMGCR)
KW - Asialoglycoprotein receptor 1 (ASGR1)
KW - Dual-target inhibitors
KW - Molecular docking
KW - Molecular dynamics simulation
UR - http://www.scopus.com/inward/record.url?scp=86000603505&partnerID=8YFLogxK
UR - https://www.sciencedirect.com/science/article/pii/S0045206825002068?via%3Dihub
U2 - 10.1016/j.bioorg.2025.108326
DO - 10.1016/j.bioorg.2025.108326
M3 - Journal article
C2 - 40080975
AN - SCOPUS:86000603505
SN - 0045-2068
VL - 158
JO - Bioorganic Chemistry
JF - Bioorganic Chemistry
M1 - 108326
ER -