TY - JOUR
T1 - Description of a new species of Histampica (Ophiuroidea: Ophiothamnidae) from cold seeps in the South China Sea and analysis of its mitochondrial genome
AU - Li, Qihang
AU - Li, Yixuan
AU - Na, Jieying
AU - Han, Xiqiu
AU - Paterson, Gordon L.J.
AU - Liu, Kun
AU - Zhang, Dongsheng
AU - Qiu, Jian Wen
N1 - Funding Information:
We thank all the scientists and crew on the R/V Haiyangdizhi #6 and Tan Kah Kee, the operation teams of the ROV HAIMA and ROPOS for their assistance in sampling. We would also thank Chen Fang and Weijia Fan for their help in processing specimens on board. We particular thank Dr. Yadong Zhou for his suggestions during the preparation of the manuscript. This study was supported by the National Natural Science Foundation of China ( 42076135 ), National Key Research and Development Program of China ( 2017YFC0306701 ), Key Special Project for Introduced Talents Team of Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) ( GML2019ZD0404 , GML2019ZD0409 ), Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) ( SMSEGL20SC02 ), and General Research Fund of the Research Grants Council of the Hong Kong S.A.R. Government ( 12101021 ).
Publisher Copyright:
© 2021 Elsevier Ltd
PY - 2021/12
Y1 - 2021/12
N2 - Ophiuroids are widely distributed marine benthic organisms, but very few species of ophiuroids have been reported from deep-sea chemosynthetic habitats including hydrothermal vents and cold seeps. In this study, a new species of Ophiothamnidae, Histampica haimaensis sp. nov., collected from cold seeps in the South China Sea, was described based on morphological and genetic analyses. The new species, representing the first known occurrence of Histampica from chemosynthetic habitats, is distinct from its congeners in having long triangular or half elliptical radial shields that are not in contact with each other, four stout, tapering and blunt arm spines, and three or four lateral oral papillae on each side of the jaw, including distally two large and broad papillae and proximally one or two small and narrow papillae. Phylogenetic analysis based on mitochondrial COX1 gene supports the morphological identification. A complete mitochondrial genome (mtgenome) of the new species was characterized by genome skimming. It is 15,759 base pairs in length and contains 37 genes including 13 protein coding genes, two ribosomal RNA genes and 22 transfer RNA (tRNA) genes. Among the tRNA genes, trnL and trnS are duplicated. When compared with the mtgenomes from the same family of ophiuroids, the mtgenome of H. haimaensis sp. nov. has undergone four potential historical gene order reversals, and one tandem duplication random loss event. ND1, ND2 and ND5 each contains a positively selected site, while COX2 contains three positively selected sites This study provides morphological description to H. haimaensis sp. nov. and reports the first cold-seep ophiuroid mitochondrial genome with a novel gene order arrangement and signals of positive selection, which may have contributed to adaption of Ophiuroidea to the deep-sea chemosynthetic environments.
AB - Ophiuroids are widely distributed marine benthic organisms, but very few species of ophiuroids have been reported from deep-sea chemosynthetic habitats including hydrothermal vents and cold seeps. In this study, a new species of Ophiothamnidae, Histampica haimaensis sp. nov., collected from cold seeps in the South China Sea, was described based on morphological and genetic analyses. The new species, representing the first known occurrence of Histampica from chemosynthetic habitats, is distinct from its congeners in having long triangular or half elliptical radial shields that are not in contact with each other, four stout, tapering and blunt arm spines, and three or four lateral oral papillae on each side of the jaw, including distally two large and broad papillae and proximally one or two small and narrow papillae. Phylogenetic analysis based on mitochondrial COX1 gene supports the morphological identification. A complete mitochondrial genome (mtgenome) of the new species was characterized by genome skimming. It is 15,759 base pairs in length and contains 37 genes including 13 protein coding genes, two ribosomal RNA genes and 22 transfer RNA (tRNA) genes. Among the tRNA genes, trnL and trnS are duplicated. When compared with the mtgenomes from the same family of ophiuroids, the mtgenome of H. haimaensis sp. nov. has undergone four potential historical gene order reversals, and one tandem duplication random loss event. ND1, ND2 and ND5 each contains a positively selected site, while COX2 contains three positively selected sites This study provides morphological description to H. haimaensis sp. nov. and reports the first cold-seep ophiuroid mitochondrial genome with a novel gene order arrangement and signals of positive selection, which may have contributed to adaption of Ophiuroidea to the deep-sea chemosynthetic environments.
KW - Cold seep
KW - Gene order rearrangement
KW - Histampica
KW - Mitochondrial genome
KW - Ophiuroidea
KW - Positive selection
UR - http://www.scopus.com/inward/record.url?scp=85118860918&partnerID=8YFLogxK
U2 - 10.1016/j.dsr.2021.103658
DO - 10.1016/j.dsr.2021.103658
M3 - Journal article
SN - 0967-0637
VL - 178
JO - Deep-Sea Research Part I: Oceanographic Research Papers
JF - Deep-Sea Research Part I: Oceanographic Research Papers
M1 - 103658
ER -