Abstract
目的:應用網絡藥理學方法,研究靈芝治療特應性皮炎(濕疹)的分子機制及有效成分。方法:用TCMSP 數據庫篩選靈芝成分;用Swiss Target Prediction網站預測每個成分的作用靶點;在OMIM、GeneCards和TTD 疾病基因數據庫中收集濕疹有關的基因;確定藥物-疾病共同靶點後,用STRING數據庫建立「蛋白質互作網絡」 (PPI網絡),用Cytoscape 3.8.2軟件及R軟件分析網絡拼作圖。結果:篩選出61種靈芝活性成分。從成分的靶點和濕疹有關的基因中得到101個共同的基因,作為靈芝治療濕疹的潛在靶點。通過分析「藥物-成分-靶點-疾病」網絡,找到靈芝酸DM和(+)-靈芝酸甲酯A可能是靈芝治療濕疹的主要活性成分。對PPI網絡的分析發現: 腫瘤壞死因子(TNF)、白介素6(IL6)、白介素1B(IL1B)、雙特異性絲裂原活化蛋白激酶1(MAP2K1)、 基質金屬蛋白酶3(MMP3)為靈芝治療濕疹的核心靶點。KEGG通路分析結果表明:靈芝治療濕疹主要與Th17 細胞分化、腫瘤壞死因子(TNF)通路有關。結論:靈芝治療濕疹的核心成分是靈芝酸DM和(+)-靈芝酸甲酯A; 核心靶點為TNF、IL6、IL1B、MAP2K1和MMP3;核心通路為Th17細胞分化和TNF通路。本研究為發現靈芝抗濕疹的分子機制及有效成分奠定了基礎。
Objective: This study aims to explore the molecular mechanisms and bioactive compounds of ganoderma in treating atopic dermatitis (eczema) by network pharmacology analysis. Methods: The components of ganoderma and their corresponding targets were collected from the TCMSP database and Swiss Target Prediction online website, respectively. Eczema-related genes were collected from OMIM, GeneCards and TTD databases. The protein-protein interaction (PPI) network was constructed using a STRING database after obtaining the common molecules of ganoderma targets and eczema-related genes. The Cytoscape3.8.2 software and R programming language were used to analyze and visualize the networks. Results: A total of 61 active ingredients of ganoderma were collected, and 101 common genes of Ganoderma targets and eczema-related genes were identified. By analyzing the "herb-bioactive compound-target-disease" network, we found that ganoderma acid DM and (+) methyl ganolucidate A may be the main bioactive compounds of ganoderma in treating eczema. PPI network analysis shows that tumor necrosis factor (TNF)Z interleukin 6 (IL6), interleukin 1B (IL1B), mitogen-activated protein kinase Kinase 1 (MAP2K1) and matrix metalloproteinase 3 (MMP3) are the core anti-eczema targets of ganoderma. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that Th17 cell differentiation and TNF signaling pathway may be involved in the anti-eczema effects of ganoderma. Conclusion: The core components of Ganoderma in treating eczema are ganoderma acid DM and (+) methyl ganolucidate A. The core targets involved in the anti-eczema effects of ganoderma are TNF, interleukin (IL)-6, I L1B, MAP2K1, and MMP3, while the involved core pathways are Th17 cell differentiation and the TNF signaling pathway. This study lays a foundation for investigating the anti-eczema mechanisms and bioactive compounds of ganoderma.
Objective: This study aims to explore the molecular mechanisms and bioactive compounds of ganoderma in treating atopic dermatitis (eczema) by network pharmacology analysis. Methods: The components of ganoderma and their corresponding targets were collected from the TCMSP database and Swiss Target Prediction online website, respectively. Eczema-related genes were collected from OMIM, GeneCards and TTD databases. The protein-protein interaction (PPI) network was constructed using a STRING database after obtaining the common molecules of ganoderma targets and eczema-related genes. The Cytoscape3.8.2 software and R programming language were used to analyze and visualize the networks. Results: A total of 61 active ingredients of ganoderma were collected, and 101 common genes of Ganoderma targets and eczema-related genes were identified. By analyzing the "herb-bioactive compound-target-disease" network, we found that ganoderma acid DM and (+) methyl ganolucidate A may be the main bioactive compounds of ganoderma in treating eczema. PPI network analysis shows that tumor necrosis factor (TNF)Z interleukin 6 (IL6), interleukin 1B (IL1B), mitogen-activated protein kinase Kinase 1 (MAP2K1) and matrix metalloproteinase 3 (MMP3) are the core anti-eczema targets of ganoderma. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that Th17 cell differentiation and TNF signaling pathway may be involved in the anti-eczema effects of ganoderma. Conclusion: The core components of Ganoderma in treating eczema are ganoderma acid DM and (+) methyl ganolucidate A. The core targets involved in the anti-eczema effects of ganoderma are TNF, interleukin (IL)-6, I L1B, MAP2K1, and MMP3, while the involved core pathways are Th17 cell differentiation and the TNF signaling pathway. This study lays a foundation for investigating the anti-eczema mechanisms and bioactive compounds of ganoderma.
Translated title of the contribution | Study on the molecular mechanisms and bioactive compounds of Ganoderma lucidum in the treatment of atopic dermatitis based on network pharmacology |
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Original language | Chinese (Traditional) |
Article number | 12 |
Number of pages | 7 |
Journal | 香港中醫雜誌 |
Volume | 18 |
Issue number | 1 |
Publication status | Published - Jan 2023 |
User-Defined Keywords
- 靈芝
- 特應性皮炎
- 濕疹
- 網絡藥理學
- 作用機制
- 有效成分
- Ganoderma
- Atopic Dermatitis
- Eczema
- Network pharmacology
- Mechanisms of actions
- Bioactive compounds