Yiji XIA

2024

A simple, cost-effective, and efficient method for screening CRISPR/Cas9 mutants in plants

Wang, Y., Ma, J., Wu, Y., Yang, S., Wang, P., Zhang, H., Li, J., Chen, L., Kong, W., Xia, Y., Wang, Q. & Liu, J., Dec 2024, In: Journal of Plant Physiology. 303, 9 p., 154375.

Research output: Contribution to journal › Journal article › peer-review

Harnessing spatial transcriptomics for advancing plant regeneration research

Zhang, B., Zhang, H. & Xia, Y., Jul 2024, In: Trends in Plant Science. 29, 7, p. 718-720 3 p.

Research output: Contribution to journal › Journal article › peer-review

1 Citation (Scopus)

Maize lipid droplet-associated protein 2 is recruited by a virus to enhance viral multiplication and infection through regulating cellular fatty acid metabolism

Wang, S., Wang, X., Li, S., Sun, X., Xue, M., Di, D., Zhang, A., Zhang, Y., Xia, Y., Zhou, T. & Fan, Z., Sept 2024, In: The Plant Journal. 119, 5, p. 2484-2499 16 p.

Research output: Contribution to journal › Journal article › peer-review

Response to the Comment on “DpCoA tagSeq: Barcoding dpCoA-Capped RNA for Direct Nanopore Sequencing via Maleimide-Thiol Reaction”

Shao, X., Zhang, H., Zhu, Z., Ji, F., He, Z., Yang, Z., Xia, Y. & Cai, Z., 9 Jan 2024, In: Analytical Chemistry. 96, 1, p. 610-613 4 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

2 Citations (Scopus)

2023

A maize lipid droplet-associated protein is modulated by a virus to promote viral multiplication and infection

Wang, S., Li, S., Wang, X., Sun, X., Xue, M., Di, D., Zhang, A., Zhang, Y., Xia, Y., Zhou, T. & Fan, Z., 7 Feb 2023, Cold Spring Harbor Laboratory Press, 47 p. (bioRxiv).

Research output: Working paper › Preprint

Arabidopsis DXO1, a decapping enzyme for NAD-capped RNAs, activates RNMT1 to methylate the mRNA guanosine cap

Xiao, C., Zhang, H., Li, K., Hua, J., Zhang, F., Li, Q., Liang, S., Liu, W., Zhong, H., Cai, Z. & Xia, Y., 7 Jun 2023, The 33rd International Conference on Arabidopsis Research: Arabidopsis for SDGs. ICAR2023 Organizing Committee, p. 52-53 2 p.

Research output: Chapter in book/report/conference proceeding › Conference proceeding › peer-review

Arabidopsis DXO1 activates RNMT1 to methylate the mRNA guanosine cap

Xiao, C., Li, K., Hua, J., He, Z., Zhang, F., Li, Q., Zhang, H., Yang, L., Pan, S., Cai, Z., Yu, Z., Wong, K. B. & Xia, Y., 13 Jan 2023, In: Nature Communications. 14, 12 p., 202.

Research output: Contribution to journal › Journal article › peer-review

Open Access

7 Citations (Scopus)

Arabidopsis EXTRA-LARGE G PROTEIN 1 (XLG1) functions together with XLG2 and XLG3 in PAMP-triggered MAPK activation and immunity

Wang, Y., Zhang, H., Wang, P., Zhong, H., Liu, W., Zhang, S., Xiong, L., Wu, Y. & Xia, Y., Mar 2023, In: Journal of Integrative Plant Biology. 65, 3, p. 825-837 13 p.

Research output: Contribution to journal › Journal article › peer-review

11 Citations (Scopus)

DpCoA tagSeq: Barcoding dpCoA-Capped RNA for Direct Nanopore Sequencing via Maleimide-Thiol Reaction

Shao, X., Zhang, H., Zhu, Z., Ji, F., He, Z., Yang, Z., Xia, Y. & Cai, Z., 25 Jul 2023, In: Analytical Chemistry. 95, 29, p. 11124–11131 8 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

7 Citations (Scopus)

2022

Arabidopsis MAPKK kinases YODA, MAPKKK3, and MAPKKK5 are functionally redundant in development and immunity

Wang, Y., Wu, Y., Zhang, H., Wang, P. & Xia, Y., Sept 2022, In: Plant Physiology. 190, 1, p. 206-210 5 p.

Research output: Contribution to journal › Letter › peer-review

Open Access

17 Citations (Scopus)

Arabidopsis PUB2 and PUB4 connect signaling components of pattern-triggered immunity

Wang, Y., Wu, Y., Zhong, H., Chen, S., Wong, K. B. & Xia, Y., Mar 2022, In: New Phytologist. 233, 5, p. 2249-2265 17 p.

Research output: Contribution to journal › Journal article › peer-review

22 Citations (Scopus)

Growth asymmetry precedes differential auxin response during apical hook initiation in Arabidopsis

Peng, Y., Zhang, D., Qiu, Y., Xiao, Z., Ji, Y., Li, W., Xia, Y., Wang, Y. & Guo, H., Jan 2022, In: Journal of Integrative Plant Biology. 64, 1, p. 5-22 18 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

14 Citations (Scopus)

2021

A novel pathogenicity determinant hijacks maize catalase 1 to enhance viral multiplication and infection

Jiao, Z., Tian, Y., Cao, Y., Wang, J., Zhan, B., Zhao, Z., Sun, B., Guo, C., Ma, W., Liao, Z., Zhang, H., Zhou, T., Xia, Y. & Fan, Z., May 2021, In: New Phytologist. 230, 3, p. 1126-1141 16 p.

Research output: Contribution to journal › Journal article › peer-review

45 Citations (Scopus)

AtHDA6 functions as an H3K18ac eraser to maintain pericentromeric CHG methylation in Arabidopsis thaliana

Wang, Q., Bao, X., Chen, S., Zhong, H., Liu, Y., Zhang, L., Xia, Y., Kragler, F., Luo, M., Li, X. D., Lam, H. M. & Zhang, S., 27 Sept 2021, In: Nucleic Acids Research. 49, 17, p. 9755-9767 13 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

7 Citations (Scopus)

SPAAC-NAD-seq, a sensitive and accurate method to profile NAD⁺-capped transcripts

Hu, H., Flynn, N., Zhang, H., You, C., Hang, R., Wang, X., Zhong, H., Chan, Z., Xia, Y. & Chen, X., 30 Mar 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 13, 11 p., e2025595118.

Research output: Contribution to journal › Journal article › peer-review

Open Access

28 Citations (Scopus)

Use of NAD tagSeq II to identify growth phase-dependent alterations in E. coli RNA NAD⁺ capping

Zhang, H., Zhong, H., Wang, X., Zhang, S., Shao, X., Hu, H., Yu, Z., Cai, Z., Chen, X. & Xia, Y., 6 Apr 2021, In: Proceedings of the National Academy of Sciences of the United States of America. 118, 14, 11 p., e2026183118.

Research output: Contribution to journal › Journal article › peer-review

Open Access

22 Citations (Scopus)

2020

Antifungal Defensins In Controlling Panama Wilt of Banana Fusarium oxysporum f.sp.cubense

Radhajeyalakshmi, R., Xia, Y. & Shah, D., Apr 2020, In: Annals of Biological Sciences. 8, 2

Research output: Contribution to journal › Journal article › peer-review

Arabidopsis DXO1 possesses deNADding and exonuclease activities and its mutation affects defense-related and photosynthetic gene expression

Pan, S., Li, K. E., Huang, W., Zhong, H., Wu, H., Wang, Y., Zhang, H., Cai, Z., Guo, H., Chen, X. & Xia, Y., 1 Jul 2020, In: Journal of Integrative Plant Biology. 62, 7, p. 967-983 17 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

29 Citations (Scopus)

Emerging Roles of microRNAs in Plant Heavy Metal Tolerance and Homeostasis

Ding, Y., Ding, L., Xia, Y., Wang, F. & Zhu, C., 19 Feb 2020, In: Journal of Agricultural and Food Chemistry. 68, 7, p. 1958-1965 8 p.

Research output: Contribution to journal › Journal article › peer-review

82 Citations (Scopus)

NAD tagSeq for transcriptome-wide identification and characterization of NAD⁺-capped RNAs

Shao, X., Zhang, H., Yang, Z., Zhong, H., Xia, Y. & Cai, Z., Sept 2020, In: Nature Protocols. 15, 9, p. 2813-2836 24 p.

Research output: Contribution to journal › Journal article › peer-review

13 Citations (Scopus)

New insights into Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs

Zhang, S., Li, R., Zhang, L., Chen, S., Xie, M., Yang, L., Xia, Y., Foyer, C. H., Zhao, Z. & Lam, H. M., 20 Aug 2020, In: Nucleic Acids Research. 48, 14, p. 7700-7711 12 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

58 Citations (Scopus)

TagSeqTools: a flexible and comprehensive analysis pipeline for NAD tagSeq data

Zhong, H., Cai, Z., Yang, Z. & Xia, Y., 9 Mar 2020, Cold Spring Harbor Laboratory Press, 23 p. (bioRxiv).

Research output: Working paper › Preprint

Open Access

2019

Analyzing and Predicting Phloem Mobility of Macromolecules with an Online Database

Guan, D., Xia, Y. & Zhang, S., 14 Jun 2019, Phloem: Methods and Protocols. Liesche, J. (ed.). 1st ed. New York: Humana Press Inc., p. 433-438 6 p. (Methods in Molecular Biology; vol. 2014).

Research output: Chapter in book/report/conference proceeding › Chapter › peer-review

Bisphenol S induced epigenetic and transcriptional changes in human breast cancer cell line MCF-7

Huang, W., Zhao, C., Zhong, H., ZHANG, S., Xia, Y. & Cai, Z., Mar 2019, In: Environmental Pollution. 246, p. 697-703 7 p.

Research output: Contribution to journal › Journal article › peer-review

50 Citations (Scopus)

NAD⁺-capped RNAs are widespread in the Arabidopsis transcriptome and can probably be translated

Wang, Y., Li, S., Zhao, Y., You, C., Le, B., Gong, Z., Mo, B., XIA, Y. & Chen, X., 11 Jun 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 24, p. 12094-12102 9 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

73 Citations (Scopus)

NAD tagSeq reveals that NAD⁺-capped RNAs are mostly produced from a large number of protein-coding genes in Arabidopsis

Zhang, H., Zhong, H., Zhang, S., Shao, X., Ni, M., Cai, Z., Chen, X. & Xia, Y., 11 Jun 2019, In: Proceedings of the National Academy of Sciences of the United States of America. 116, 24, p. 12072-12077 6 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

58 Citations (Scopus)

Redox Proteome Perturbation in Arabidopsis upon Pseudomonas syringae Infection

Liu, P., Zhang, H., XIONG, L. & XIA, Y., Jan 2019, In: Journal of Proteomics and Bioinformatics. 12, 1, p. 1-9

Research output: Contribution to journal › Journal article › peer-review

Open Access

Redox-sensitive bZIP68 plays a role in balancing stress tolerance with growth in Arabidopsis

Li, Y., Liu, W., Zhong, H., Zhang, H. L. & Xia, Y., Nov 2019, In: The Plant Journal. 100, 4, p. 768-783 16 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

25 Citations (Scopus)

2018

Signal motif-dependent ER export of the Qc-SNARE BET12 interacts with MEMB12 and affects PR1 trafficking in Arabidopsis

Chung, K. P., Zeng, Y., Li, Y., Ji, C., Xia, Y. & Jiang, L., 2018, In: Journal of Cell Science. 131, 2, jcs.202838.

Research output: Contribution to journal › Journal article › peer-review

Open Access

30 Citations (Scopus)

The caseinolytic protease complex component CLPC1 in Arabidopsis maintains proteome and RNA homeostasis in chloroplasts

ZHANG, S., Zhang, H., XIA, Y. & XIONG, L., 12 Sept 2018, In: BMC Plant Biology. 18, 1, 192.

Research output: Contribution to journal › Journal article › peer-review

Open Access

8 Citations (Scopus)

2017

EXTRA-LARGE G proteins interact with E3 ligases PUB4 and PUB2 and function in Cytokinin and Developmental processes

Wang, Y., Wu, Y., Yu, B., Yin, Z. & Xia, Y., Feb 2017, In: Plant Physiology. 173, 2, p. 1235-1246 12 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

59 Citations (Scopus)

PlaMoM: A comprehensive database compiles plant mobile macromolecules

Guan, D., Yan, B., Thieme, C., Hua, J., Zhu, H., Boheler, K. R., Zhao, Z., Kragler, F., Xia, Y. & Zhang, S., Jan 2017, In: Nucleic Acids Research. 45, D1, p. D1021-D1028 8 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

File

27 Citations (Scopus)

42 Downloads (Pure)

Prediction of reversible disulfide based on features from local structural signatures

Sun, M. A., Wang, Y., Zhang, Q., Xia, Y., Ge, W. & Guo, D., 4 Apr 2017, In: BMC Genomics. 18, 1, 279.

Research output: Contribution to journal › Journal article › peer-review

Open Access

42 Citations (Scopus)

2015

Analysis of different strategies adapted by two cassava cultivars in response to drought stress: Ensuring survival or continuing growth

Zhao, P., Liu, P., Shao, J., Li, C., Wang, B., Guo, X., YAN, B., XIA, Y. & Peng, M., 1 Mar 2015, In: Journal of Experimental Botany. 66, 5, p. 1477-1488 12 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

104 Citations (Scopus)

Arabidopsis PARG1 is the key factor promoting cell survival among the enzymes regulating post-translational poly(ADP-ribosyl)ation

Zhang, H., Gu, Z., Wu, Q., Yang, L., Liu, C., Ma, H., Xia, Y. & Ge, X., 30 Oct 2015, In: Scientific Reports. 5, 15892.

Research output: Contribution to journal › Journal article › peer-review

Open Access

27 Citations (Scopus)

AtDsPTP1 acts as a negative regulator in osmotic stress signalling during Arabidopsis seed germination and seedling establishment

Liu, R., Liu, Y., Ye, N., Zhu, G., Chen, M., Jia, L., Xia, Y., Shi, L., Jia, W. & Zhang, J., 1 Mar 2015, In: Journal of Experimental Botany. 66, 5, p. 1339-1353 15 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

33 Citations (Scopus)

CDPK1, an Arabidopsis thaliana calcium-dependent protein kinase, is involved in plant defense response

Nie, L., Wang, R., Xia, Y. & Li, G., 1 Nov 2015, In: Russian Journal of Plant Physiology. 62, 6, p. 866-874 9 p.

Research output: Contribution to journal › Journal article › peer-review

9 Citations (Scopus)

Exocyst-positive organelles and autophagosomes are distinct organelles in plants

Lin, Y., Ding, Y., Wang, J., Shen, J., Kung, C. H., Zhuang, X., Cui, Y., Yin, Z., Xia, Y., Lin, H., Robinson, D. G. & Jiang, L., Nov 2015, In: Plant Physiology. 169, 3, p. 1917-1932 16 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

45 Citations (Scopus)

Proteomic identification of early salicylate-and flg22-responsive redox-sensitive proteins in Arabidopsis

Liu, P., Zhang, H., Yu, B., Xiong, L. & Xia, Y., 27 Feb 2015, In: Scientific Reports. 5, 7 p., 8625.

Research output: Contribution to journal › Journal article › peer-review

Open Access

44 Citations (Scopus)

Reduced ABA accumulation in the root system is caused by ABA exudation in upland rice (Oryza sativa L. var. Gaoshan1) and this enhanced drought adaptation

Shi, L., Guo, M., Ye, N., Liu, Y., Liu, R., Xia, Y., Cui, S. & Zhang, J., 2015, In: Plant and Cell Physiology. 56, 5, p. 951-964 14 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

38 Citations (Scopus)

Rice G-protein subunits qPE9-1 and RGB1 play distinct roles in abscisic acid responses and drought adaptation

Zhang, D. P., Zhou, Y., Yin, J. F., Yan, X. J., Lin, S., Xu, W. F., Baluška, F., Wang, Y. P., XIA, Y., Liang, G. H. & Liang, J. S., Oct 2015, In: Journal of Experimental Botany. 66, 20, p. 6371-6384 14 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

76 Citations (Scopus)

Scenedesmus quadricauda for Nutrient Removal and Lipid Production in Wastewater

Wong, Y. K., YUNG, K. L., Tsang, Y. F., XIA, Y., Wang, L. & Ho, K. C., Dec 2015, In: Water Environment Research. 87, 12, p. 2037-2044 8 p.

Research output: Contribution to journal › Journal article › peer-review

22 Citations (Scopus)

Systems-level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry

Ho, V. W. S., Wong, M. K., An, X., Guan, D., Shao, J., Ng, H. C. K., Ren, X., He, K., Liao, J., Ang, Y., Chen, L., Huang, X., Yan, B., XIA, Y., Chan, L. L. H., Chow, K. L., Yan, H. & Zhao, Z., 1 Jun 2015, In: Molecular Systems Biology. 11, 6, 18 p., 814.

Research output: Contribution to journal › Journal article › peer-review

Open Access

File

23 Citations (Scopus)

28 Downloads (Pure)

The Arabidopsis gene DIG6 encodes a large 60S subunit nuclear export GTPase 1 that is involved in ribosome biogenesis and affects multiple auxin-regulated development processes

Zhao, H., Lü, S., Li, R., Chen, T., Zhang, H., Cui, P., Ding, F., Liu, P., Wang, G., XIA, Y., Running, M. P. & XIONG, L., Nov 2015, In: Journal of Experimental Botany. 66, 21, p. 6863-6875 13 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

19 Citations (Scopus)

Two domain-disrupted hda6 alleles have opposite epigenetic effects on transgenes and some endogenous targets

ZHANG, S., Zhan, X., Xu, X., Cui, P., Zhu, J. K., XIA, Y. & XIONG, L., 15 Dec 2015, In: Scientific Reports. 5, 17832.

Research output: Contribution to journal › Journal article › peer-review

Open Access

8 Citations (Scopus)

2014

Identification of redox-sensitive cysteines in the arabidopsis proteome using OxiTRAQ, a quantitative redox proteomics method

Liu, P., Zhang, H., Wang, H. & Xia, Y., Mar 2014, In: Proteomics. 14, 6, p. 750-762 13 p.

Research output: Contribution to journal › Journal article › peer-review

80 Citations (Scopus)

Stable isotope metabolic labeling-based quantitative thiol redox proteomic analysis of hydrogen peroxide-treated Arabidopsis plant

Hu, Q., Guo, G., Yang, Z., Li, Y., Xia, Y. & Li, N., May 2014, In: Journal of Proteomics and Bioinformatics. 7, 5, p. 121-133 13 p.

Research output: Contribution to journal › Journal article › peer-review

Open Access

7 Citations (Scopus)

2013

Analysis of banana transcriptome and global gene expression profiles in banana roots in response to infection by race 1 and tropical race 4 of Fusarium oxysporum f. sp. cubense

Li, C., Shao, J., Wang, Y., Li, W., Guo, D., Yan, B., Xia, Y. & Peng, M., 5 Dec 2013, In: BMC Genomics. 14, 1, 851.

Research output: Contribution to journal › Journal article › peer-review

Open Access

115 Citations (Scopus)

Isolation of AtNUDT5 gene promoter and characterization of its activity in transgenic Arabidopsis thaliana

Zhang, X. C., Li, M. Y., Ruan, M. B., XIA, Y., Wu, K. X. & Peng, M., Mar 2013, In: Applied Biochemistry and Biotechnology. 169, 5, p. 1557-1565 9 p.

Research output: Contribution to journal › Journal article › peer-review

4 Citations (Scopus)

Methods for analysis of disease resistance and the defense response in arabidopsis

Li, G., Zhang, X., Wan, D., Zhang, S. & Xia, Y., 2013, G Protein-Coupled Receptor Signaling in Plants: Methods and Protocols. Humana Press Inc., p. 55-66 12 p. (Methods in Molecular Biology; vol. 1043).

Research output: Chapter in book/report/conference proceeding › Chapter › peer-review

3 Citations (Scopus)

Yiji XIA, Prof

Research Output

Search results