Projects per year
Personal profile
Chinese Name
張璐
Biography
Dr. Lu (Eric) Zhang is an Associate Professor of Computer Science at Hong Kong Baptist University (HKBU). Before joining HKBU, he was a postdoctoral fellow in the Department of Computer Science and Pathology at Stanford University, supervised by Prof. Serafim Batzoglou and Prof. Arend Sidow. He received an MPhil degree from Li Ka Shing Faculty of Medicine at The University of Hong Kong and a Ph.D. degree in Computer Science from City University of Hong Kong in 2012 and 2016, respectively. In 2008, he received a B.Eng in Software Engineering from Tianjin University. In 2015, he was a visiting scholar in the Department of Mathematics at UC Berkeley and worked with Prof. Stephen Smale. He has an interdisciplinary background in genomics, statistics and computer science. His primary research interests are computational genomics, bioinformatics and AI for Genomics. His team works specifically on 1. Develop computational tools to support advanced high-throughput sequencing technologies on human gut metagenome. 2. Develop foundation models on metagenomics and single-cell multiomics data. 3. Explore the application of Large Language Models on modern healthcare problems. His work has been published in several top-tier journals, such as PNAS, Briefings in Nature Machine Intellgence, Bioinformatics, NAR Genomics and Bioinformatics, GigaScience, Nature Communications, Nature Genetics, Genome Biology, Bioinformatics, etc
Research Interests
His primary research interests are computational genomics, bioinformatics, AI for genomics and machine learning.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Postdoctoral Fellow, Stanford University
18 Jun 2016 → 31 Jan 2019
Award Date: 31 Jan 2019
PhD student, City University of Hong Kong
1 Sept 2012 → 15 Feb 2016
Award Date: 15 Feb 2016
Mphil Student, The University of Hong Kong
1 Sept 2010 → 31 Aug 2012
Award Date: 31 Aug 2012
Undergraduate student, Tianjin University
1 Sept 2004 → 15 Jul 2008
Award Date: 15 Jul 2008
Keywords
- QA75 Electronic computers. Computer science
- Bioinformatics
- Computational Genomics
- AI for Science
Fingerprint
Dive into the research topics where Lu ZHANG is active. Topic labels come from the works of this scholar.
- 1 Similar Scholars
Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
-
Advancing clinical differentiation between constipation-predominant irritable bowel syndrome and functional constipation using machine learning models
ZHANG, L. (PI), VELDSMAN, W. P. (CoI), BIAN, Z. (CoI) & Lam, Y. Y. (CoI)
14/09/24 → 13/09/27
Project: Research project
-
Improved Metabolic Network Reconstruction and Metabolite Profiles Prediction using Complete and Strain-Resolved Microbial Genomes
ZHANG, L. (PI), BIAN, Z. (CoPI), ZHAI, L. (CoPI), Li, S. (CoPI) & Li, J. (CoPI)
30/06/24 → 31/05/27
Project: Research project
-
AI Models Helping Combat Antibiotic Resistance in ICU – Personalized Decision Support for Empirical Antibiotic Therapy
YIN, K. (PI), CHEUNG, K. W. (CoI), ZHANG, L. (CoI), Tong, T. M. C. (CoI) & SIN, C. T. E. (CoI)
1/04/24 → 31/03/27
Project: Research project
-
Investigation of abdominal pain management in diarrhea-predominant irritable bowel syndrome via short-chain fatty acids/GLP-1 axis
BIAN, Z. (PI), ZHANG, L. (CoI) & WONG, H. L. X. (CoI)
1/01/24 → 31/12/26
Project: Research project
-
Computational Models for Health Management System using Multi-Source Data
ZHANG, L. (PI)
8/05/23 → 30/11/23
Project: Research project
-
A multi-modal deep language model for contaminant removal from metagenome-assembled genomes
Zou, B., Wang, J., Ding, Y., Zhang, Z., Huang, Y., Fang, X., Cheung, K. C., See, S. & Zhang, L., Oct 2024, In: Nature Machine Intelligence. 6, 10, p. 1245–1255 11 p.Research output: Contribution to journal › Journal article › peer-review
-
Exploring high-quality microbial genomes by assembling short-reads with long-range connectivity
Zhang, Z., Xiao, J., Wang, H., Yang, C., Huang, Y., Yue, Z., Chen, Y., Han, L., Yin, K., Lyu, A., Fang, X. & Zhang, L., 31 May 2024, In: Nature Communications. 15, 1, 18 p., 4631.Research output: Contribution to journal › Journal article › peer-review
Open Access1 Citation (Scopus) -
LRTK: a platform agnostic toolkit for linked-read analysis of both human genome and metagenome
Yang, C., Zhang, Z., Huang, Y., Xie, X., Liao, H., Xiao, J., Veldsman, W. P., Yin, K., Fang, X. & Zhang, L., 13 Jun 2024, In: GigaScience. 13, 13 p., giae028.Research output: Contribution to journal › Journal article › peer-review
Open Access1 Citation (Scopus) -
Multi-omic profiling reveals associations between the gut microbiome, host genome and transcriptome in patients with colorectal cancer
Zou, S., Yang, C., Zhang, J., Zhong, D., Meng, M., Zhang, L., Chen, H. & Fang, L., 18 Feb 2024, In: Journal of Translational Medicine. 22, 13 p., 175.Research output: Contribution to journal › Journal article › peer-review
Open Access7 Citations (Scopus) -
Neural Atoms: Propagating Long-range Interaction in Molecular Graphs through Efficient Communication Channel
Li, X., Zhou, Z., Yao, J., Rong, Y., Zhang, L. & Han, B., May 2024, Proceedings of the Twelfth International Conference on Learning Representations, ICLR 2024. International Conference on Learning Representations, p. 1-33 33 p. (Proceedings of the International Conference on Learning Representations, ICLR).Research output: Chapter in book/report/conference proceeding › Conference proceeding › peer-review
Open Access1 Citation (Scopus)
Prizes
-
-
President’s Award for Outstanding Performance as Early Career Researcher
ZHANG, L. (Recipient), 2023
Prize: Award
Activities
- 8 Editor/reviewer for publications (incl. CDCF T61 Journal Editor)
-
Health Information Science and Systems (Journal)
ZHANG, L. (Guest editor)
Apr 2023Activity: Publication peer-review/editorial work › Editor/reviewer for publications (incl. CDCF T61 Journal Editor)
-
BMC Methods (Journal)
ZHANG, L. (Member of editorial board)
2023 → …Activity: Publication peer-review/editorial work › Editor/reviewer for publications (incl. CDCF T61 Journal Editor)
-
Frontiers in Genetics (Journal)
ZHANG, L. (Guest editor)
2022Activity: Publication peer-review/editorial work › Editor/reviewer for publications (incl. CDCF T61 Journal Editor)
-
Life (Journal)
ZHANG, L. (Guest editor)
2022Activity: Publication peer-review/editorial work › Editor/reviewer for publications (incl. CDCF T61 Journal Editor)
-
Current Gene Therapy (Journal)
ZHANG, L. (Member of editorial board)
14 Nov 2022 → 30 Jun 2023Activity: Publication peer-review/editorial work › Editor/reviewer for publications (incl. CDCF T61 Journal Editor)